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xgboost Rパッケージを0.4-4から最新のCRANバージョンに更新したいと思います。次のメッセージにxgboost Rパッケージのインストールに失敗しました
options(repos = c(CRAN = "https://mran.microsoft.com/snapshot/2017-01-19"))
install.packages("xgboost")
結果
installing *source* package 'xgboost' ...
** package 'xgboost' successfully unpacked and MD5 sums checked
configure: creating ./config.status
config.status: creating src/Makevars
** libs
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fopenmp -c xgboost_R.cc -o xgboost_R.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'xgboost_R.o' failed
make: [xgboost_R.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fopenmp -c xgboost_custom.cc -o xgboost_custom.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'xgboost_custom.o' failed
make: [xgboost_custom.o] Error 127 (ignored)
gcc -std=gnu99 -I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fpic -DU_STATIC_IMPLEMENTATION -O2 -g -c xgboost_assert.c -o xgboost_assert.o
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fopenmp -c amalgamation/xgboost-all0.cc -o amalgamation/xgboost-all0.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'amalgamation/xgboost-all0.o' failed
make: [amalgamation/xgboost-all0.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fopenmp -c amalgamation/dmlc-minimum0.cc -o amalgamation/dmlc-minimum0.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'amalgamation/dmlc-minimum0.o' failed
make: [amalgamation/dmlc-minimum0.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fopenmp -c rabit/src/engine_empty.cc -o rabit/src/engine_empty.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'rabit/src/engine_empty.o' failed
make: [rabit/src/engine_empty.o] Error 127 (ignored)
I/usr/lib64/microsoft-r/3.3/lib64/R/include -DNDEBUG -I./include -I./dmlc-core/include -I./rabit/include -I. -DXGBOOST_STRICT_R_MODE=1 -DDMLC_LOG_BEFORE_THROW=0 -DDMLC_ENABLE_STD_THREAD=0 -DDMLC_DISABLE_STDIN=1 -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_CUSTOMIZE_LOGGER=1 -DRABIT_CUSTOMIZE_MSG_ -DRABIT_STRICT_CXX98_ -DU_STATIC_IMPLEMENTATION -fopenmp -c rabit/src/c_api.cc -o rabit/src/c_api.o
sh: I/usr/lib64/microsoft-r/3.3/lib64/R/include: No such file or directory
/usr/lib64/microsoft-r/3.3/lib64/R/etc/Makeconf:139: recipe for target 'rabit/src/c_api.o' failed
make: [rabit/src/c_api.o] Error 127 (ignored)
-shared -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -o xgboost.so ./xgboost_R.o ./xgboost_custom.o ./xgboost_assert.o ./amalgamation/xgboost-all0.o ./amalgamation/dmlc-minimum0.o ./rabit/src/engine_empty.o ./rabit/src/c_api.o -fopenmp -L/usr/lib64/microsoft-r/3.3/lib64/R/lib -lR
sh: line 2: -shared: command not found
/usr/lib64/microsoft-r/3.3/lib64/R/share/make/shlib.mk:6: recipe for target 'xgboost.so' failed
make: *** [xgboost.so] Error 127
ERROR: compilation failed for package 'xgboost'
* removing '/home/norbert/R/x86_64-pc-linux-gnu-library/3.3/xgboost'
* restoring previous '/home/norbert/R/x86_64-pc-linux-gnu-library/3.3/xgboost'
Warning in install.packages :
installation of package ‘xgboost’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpvbYF34/downloaded_packages’
を使用してインストールを起動するには.ccには間違っている* xgboost_assert.cが正しくコンパイルされますが、コマンドはファイルをコンパイルするために使用されているようです - コマンドの先頭不足している。最終的なリンクコマンドについても同様です。
sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.1 LTS
locale:
[1] LC_CTYPE=pl_PL.UTF-8 LC_NUMERIC=C LC_TIME=pl_PL.UTF-8 LC_COLLATE=pl_PL.UTF-8
[5] LC_MONETARY=pl_PL.UTF-8 LC_MESSAGES=pl_PL.UTF-8 LC_PAPER=pl_PL.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=pl_PL.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] RevoUtilsMath_10.0.0
loaded via a namespace (and not attached):
[1] RevoUtils_10.0.2 tools_3.3.2
どうすればよいですか？
なぜドンにこれを追加します「本当の」CRANリポジトリからインストールしないでください（https：//cran.r-proje ct.org/package=xgboost）？今利用できるXGBoost 0.6-4があります。 – user1808924
@ user1808924：役に立たない。まったく同じ結果です。 – Norbert
'R version 3.3.1（2016-06-21）\ Platform：x86_64-redhat-linux-gnu（64-bit）\ Running：Fedora 23（Twenty Three）'で正式に構築された公式のものです。おそらく、環境に欠けているビルドツールがいくつかありますか？ – user1808924